These track the number of other enhancers (EWS) or genes (GWS) located in the "window" between the enhancer and gene of interest, accounting for potential interference or competition.
Measures how closely the activity of an enhancer aligns with the expression patterns of a target gene. theagle.Cely.1.var
While the exact string "theagle.Cely.1.var" may be a specific user-defined variable in a local dataset or script, its "interesting features" are rooted in the EAGLE: Enhancer And Gene Learning Ensemble framework. Key Features of EAGLE Variables These track the number of other enhancers (EWS)
: Likely represents the first variable or a specific variant in a ranked list of potential regulatory interactions. Key Features of EAGLE Variables : Likely represents
The physical distance between the enhancer and the gene's transcription start site.
Based on the gene's FPKM score (from RNA-seq data), representing the transcriptional activity level in specific tissues.
: This often denotes cell-type specificity , a core feature of EAGLE which allows it to distinguish between interactions that only occur in certain tissues.